MRIQC: individual T1w report

Summary

Subject ID: 001_ControlPre.
Date and time: 2018-05-06, 20:21.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2919847893289253
cnr			4.403354536269154
efc			0.6448894446524743
fber			50.46220779418945
fwhm	avg		3.5544466666666668
fwhm	x		3.5288
fwhm	y		3.76836
fwhm	z		3.36618
icvs	csf		0.18243266312257223
icvs	gm		0.48570690250525644
icvs	wm		0.33186043437217133
inu	med		1.737154245376587
inu	range		0.308329504728317
qi	1		0.0
qi	2		0.00041375304396148527
rpve	csf		25.496189830390218
rpve	gm		11.130915774728104
rpve	wm		18.37446597539604
size	x		180
size	y		256
size	z		256
snr	csf		2.2085307481204524
snr	gm		10.032784056088355
snr	total		8.827679996973332
snr	wm		14.24172518671119
snrd	csf		9.721671136461845
snrd	gm		23.51034278809644
snrd	total		24.37658720165744
snrd	wm		39.897747680414035
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.9088351055497172
summary	bg	mad	16.42047119140625
summary	bg	mean	61.409061431884766
summary	bg	median	59.297794342041016
summary	bg	n	2715533.0
summary	bg	p05	36.642669677734375
summary	bg	p95	93.68360443115235
summary	bg	stdv	17.91254425048828
summary	csf	k	0.6261596776305836
summary	csf	mad	119.56925964355469
summary	csf	mean	258.0820617675781
summary	csf	median	243.6659393310547
summary	csf	n	8669.0
summary	csf	p05	105.44785919189454
summary	csf	p95	445.8624328613281
summary	csf	stdv	110.32306671142578
summary	gm	k	0.08226416420373761
summary	gm	mad	57.3530158996582
summary	gm	mean	587.755126953125
summary	gm	median	589.2680053710938
summary	gm	n	44207.0
summary	gm	p05	488.5380035400391
summary	gm	p95	682.3504150390625
summary	gm	stdv	58.73358154296875
summary	wm	k	0.4809474086583303
summary	wm	mad	62.576011657714844
summary	wm	mean	991.056396484375
summary	wm	median	1000.0052490234375
summary	wm	n	179094.0
summary	wm	p05	859.5922668457031
summary	wm	p95	1091.549609375
summary	wm	stdv	70.21638488769531
tpm	overlap	csf	0.21211162209510803
tpm	overlap	gm	0.5316020846366882
tpm	overlap	wm	0.5210331082344055
wm2max			0.559928055372171

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	00eec52ec29d373bb232267eab3f869c
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.