MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2919847893289253
cnr4.403354536269154
efc0.6448894446524743
fber50.46220779418945
fwhmavg3.5544466666666668
fwhmx3.5288
fwhmy3.76836
fwhmz3.36618
icvscsf0.18243266312257223
icvsgm0.48570690250525644
icvswm0.33186043437217133
inumed1.737154245376587
inurange0.308329504728317
qi10.0
qi20.00041375304396148527
rpvecsf25.496189830390218
rpvegm11.130915774728104
rpvewm18.37446597539604
sizex180
sizey256
sizez256
snrcsf2.2085307481204524
snrgm10.032784056088355
snrtotal8.827679996973332
snrwm14.24172518671119
snrdcsf9.721671136461845
snrdgm23.51034278809644
snrdtotal24.37658720165744
snrdwm39.897747680414035
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.9088351055497172
summarybgmad16.42047119140625
summarybgmean61.409061431884766
summarybgmedian59.297794342041016
summarybgn2715533.0
summarybgp0536.642669677734375
summarybgp9593.68360443115235
summarybgstdv17.91254425048828
summarycsfk0.6261596776305836
summarycsfmad119.56925964355469
summarycsfmean258.0820617675781
summarycsfmedian243.6659393310547
summarycsfn8669.0
summarycsfp05105.44785919189454
summarycsfp95445.8624328613281
summarycsfstdv110.32306671142578
summarygmk0.08226416420373761
summarygmmad57.3530158996582
summarygmmean587.755126953125
summarygmmedian589.2680053710938
summarygmn44207.0
summarygmp05488.5380035400391
summarygmp95682.3504150390625
summarygmstdv58.73358154296875
summarywmk0.4809474086583303
summarywmmad62.576011657714844
summarywmmean991.056396484375
summarywmmedian1000.0052490234375
summarywmn179094.0
summarywmp05859.5922668457031
summarywmp951091.549609375
summarywmstdv70.21638488769531
tpmoverlapcsf0.21211162209510803
tpmoverlapgm0.5316020846366882
tpmoverlapwm0.5210331082344055
wm2max0.559928055372171

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum00eec52ec29d373bb232267eab3f869c
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.